List of Experiments / Activities
- Lab)
- 2EXAM DURATION: 3 HOURS SEMESTER: V
- 3L:T:P:: 0 : 0 : 2 CREIDTS : 2
- 1Retrieving sequence data from Entrez Learn how to access and retrieve nucleotide and protein sequences from the Entrez system, a key resource for bioinformatics research.
- 2Retrieving structural data of a protein using PDB database Acquire the skills to retrieve and interpret 3D protein structures from the Protein Data Bank (PDB) to understand protein function and interactions.
- 3Retrieving Motif Information of a Protein Using Prosite Explore how to identify and analyze protein motifs using the Prosite database, enhancing your understanding of protein function and classification.
- 4Locating the chromosome of a Gene Develop the ability to accurately locate and interpret the chromosomal position of genes, which is crucial for studying genomic organization and gene function.
- 5Finding ORF of a Given Sequence Gain expertise in identifying open reading frames (ORFs) within nucleotide sequences, a fundamental step in gene prediction and analysis.
- 6Locating the chromosome of a Gene Learn to identify the chromosomal location of specific genes, which is essential for understanding their role in genetics and genomic organization. B.Tech. (Biotechnology) 3rd Year Dr. A.P.J. Abdul Kalam Technical University Uttar Pradesh, Lucknow B.Tech. (Biotechnology) 3rd Year 6th Sem Syllabus B.Tech. (Biotechnology) 3rd Year Dr. A.P.J. Abdul Kalam Technical University Uttar Pradesh, Lucknow
Course Objectives
- To retrieval of the sequence data Demonstration of locating the chromosome and retrieval of gene expression data To provide practical knowledge for retrieval of PubMed data Practical knowledge of ORF finding, motif information and retrieval of Gene information
Course Outcomes (COs)
After completion of the course student will be able to:
- CO1Demonstrate the retrieval of sequence data
- CO2Perform experiments related to locating chromosome and gene expression data
- CO3Demonstrate the data retrieval system of PubMed.
- CO4Perform the ORF finding and retrieval of gene information
- CO5Utilize the Protein Data Bank (PDB) database to retrieve and interpret structural data of proteins.
- CO6Use the Prosite database to identify and retrieve motif information associated with protein sequences.
REFERENCE BOOK
- Alphey L. DNA sequencing: from experimental methods to bioinformatics. BIOS scientific publishers Ltd; 1997
- Iftekhar M, Ghalib MR. Bioinformatics Practical Manual
- Karthikeyan M, Vyas R. Practical chemoinformatics. Springer; 2014 May 6 B.Tech. (Biotechnology) 3rd Year Dr. A.P.J. Abdul Kalam Technical University Uttar Pradesh, Lucknow COURSE DETAILS: BIOINFORMATICS I (VIRTUAL LAB)
Official AKTU syllabus
This subject is on page 31, 32, 33, 34 of the original AKTU PDF.