BBI402

Database Systems and Bioinformatics

L-T-P3-1-0 Credits4 Session2025-26 TypeTheory
Appears in 1 semester

B.Tech Bioinformatics · Sem 4 (Core)

Syllabus

5 units · 40 lecture hours
Unit1

Unit 1: INTRODUCTION

8 hrs

Database -System Applications- Purpose of Database Systems, View of Data, Database Languages, introduction to Relational Databases, Database Design, Data Storage and Querying, Transaction Management, Database Architecture, Database Users and Administrators, History of Database Systems.

Unit2

Unit 2: DATABASE DESIGN AND THE E-R MODEL

8 hrs

Overview of the Design Process, The Entity Relationship Model, Constraints, Removing Redundant Attributes in Entity Sets, Entity- Relationship Diagrams, Reduction to Relational Schemas, Entity- Relationship Design Issues, Extended E-R Features, Alternative Notations for Modeling Data, Other Aspects of Database Design.

Unit3

Unit 3: RELATIONAL MODELAND ITS DESIGN TECHNIQUE

8 hrs

Introduction to the Relational model: Structure of Relational Databases, Database Schema, Keys, Schema Diagrams, Relational Query Languages, Relational Operations. Relational Database Design: Features of Good Relational Designs, Atomic Domains and First Normal Form, Decomposition Using Functional Dependencies, Functional- Dependency Theory, Algorithms for Decomposition, Decomposition Using Multivalued Dependencies, More Normal Forms, Database- Design Process, Modeling Temporal Data.

Unit4

Unit 4: STRUCTURED QUERY LANGUAGE

8 hrs

Overview of the SQL Query Language, SQL Data Definition, Basic Structure of SQL Queries, Additional Basic Operations, Set Operations, Null Values, Aggregate Functions, Nested Subqueries, Modification of the Database.

Unit5

Unit 5: BIOLOGICAL DATA BASE MANAGEMENT

8 hrs

Introduction to Biological Data Integration specifications. - Challenges Faced in the Integration of Biological Information: - Nature of Biological data,- Data sources in Life Sciences, - Challenges in information integration-. Data management in Bioinformatics, Dimensions -Describing the Space of Integration Solutions.

Course Outcomes (COs)4 outcomes

After completion of the course student will be able to:

  1. CO1Explain the basic concepts of database systems, architecture, and applications in computing.K2
  2. CO2Design conceptual models using the Entity-Relationship model and apply E-R to relational schema mapping.K3
  3. CO3Analyze relational model concepts, functional dependencies, and normalization techniques in database design.K4
  4. CO4Develop and execute SQL queries using various operations and constraints. CP 5 Understand the challenges and strategies of biological data integration in bioinformatics.K3

Text books

  1. Raghu Ramakrishnan, Johannes Gehrke, “Database Management System”,McGrawHill,3rdEdition2003
  2. Elmashri & Navathe, “Fundamentals of Database System”, Addison-Wesley Publishing,3rdEdition,2000
  3. DateC.J,“AnIntroductiontoDatabase”,Addison-WesleyPubCo,7th Edition, 2001
  4. Jeffrey D. Ullman, Jennifer Widom, “A First Course in Database System”, Prentice Hall, AWL 1st Edition, 2001
  5. PeterRob, Carlos Coronel, “Database Systems- Design, Implementation, and Management”,4th Edition,ThomsonLearning,2001.
  6. Zoe Lacroix, Terence Critchlow,” Bioinformatics: Managing Scientific Data”,Morgan Kaufmann Publishers (Elsevier Science), 2003

Official AKTU syllabus

This subject is on page 11 of the original AKTU PDF.

Official AKTU syllabus PDF ↗